PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G10360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 267aa    MW: 29077.7 Da    PI: 9.2658
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G10360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-173782147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+d+v+q+G+ +W++Ia ++  gR++k+c++rw++ 
  LPERR01G10360.1 37 RGHWRPAEDAKLKDLVAQFGPQNWNLIADKLD-GRSGKSCRLRWFNQ 82
                     899*****************************.***********996 PP

2Myb_DNA-binding582.1e-1889133147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+e+l  a++ +G++ W++Iar ++ gRt++ +k++w+ +
  LPERR01G10360.1  89 RRAFTEEEEERLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 133
                      678*******************.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3563283IPR017930Myb domain
SMARTSM007172.7E-133685IPR001005SANT/Myb domain
PfamPF002492.3E-153782IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-2837130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-263890IPR009057Homeodomain-like
CDDcd001673.38E-134081No hitNo description
PROSITE profilePS5129427.2884138IPR017930Myb domain
SMARTSM007174.1E-1588136IPR001005SANT/Myb domain
PfamPF002492.7E-1589133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2191136IPR009057Homeodomain-like
CDDcd001672.16E-1291134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSQREMISGA FFASPPPAVP EIEEEVSAPA AGKLCARGHW RPAEDAKLKD LVAQFGPQNW  60
NLIADKLDGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL MAAHRAYGNK WALIARLFPG  120
RTDNAVKNHW HVLMARRHRE HSGAFRRRST TTTKAPPSSA SPPPQLVLHH QTTRAYSGGG  180
DSEESASTCT TDLSLSSGIA AAVPCFYQGY DMVAAPHAAA LFAPSARSAF SVPSPARHQK  240
AAGVVEQGAD NRAGEITFFD FLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32351375107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074611e-146AK107461.1 Oryza sativa Japonica Group cDNA clone:002-129-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631112.11e-99PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0D9UZK30.0A0A0D9UZK3_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g16810.13e-99(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.13e-73myb domain protein 56